This article presents the use of a multi-criterion Analytic Hierarchy Process (AHP) method to assess geological and mining condition nuisance in longwall mining operations in selected coal mines in Poland. For this purpose, a methodology has been developed which was used to calculate the operational nuisance indicator (WUe) in relation to the cost of mining coal in individual longwalls. Components of the aggregate operational nuisance indicator include four sub-indicators: the natural hazards indicator (UZN), an indicator describing the seam parameters (UPZ), an indicator describing the technical parameters (UT) and an environmental impact indicator (UŚ). In total, the impact of 28 different criteria, which formed particular components of the nuisance indicators were analysed. In total 471 longwalls in 11 coal mines were analysed, including 277 longwalls that were mined in the period of 2011 to 2016 and 194 longwalls scheduled for exploitation in the years 2017 to 2021. Correlation analysis was used to evaluate the relationships between nuisance and the operating costs of longwalls. The analysis revealed a strong correlation between the level of nuisance and the operating costs of the longwalls under study. The design of the longwall schedule should therefore also take into account the nuisance arising from the geological and mining conditions of the operations. Selective operations management allows for the optimization of costs for mining in underground mines using the longwall system. This knowledge can also be used to reduce the total operating costs of mines as a result of abandoning the mining operations in entire longwalls or portions of longwalls that may be permanently unprofitable. Currently, underground mines do not employ this optimization method, which even more emphasizes the need for popularizing this approach.