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Abstract

Field and laboratory protocols that originally led to the success of published studies have previously been only briefly laid out in the methods sections of scientific publications. For the sake of repeatability, we regard the details of the methodology that allowed broad−range DNA studies on deep−sea isopods too valuable to be neglected. Here, a com− prehensive summary of protocols for the retrieval of the samples, fixation on board research vessels, PCR amplification and cycle sequencing of altogether six loci (three mitochondrial and three nuclear) is provided. These were adapted from previous protocols and developed especially for asellote Isopoda from deep−sea samples but have been successfully used in some other peracarids as well. In total, about 2300 specimens of isopods, 100 amphipods and 300 tanaids were sequenced mainly for COI and 16S and partly for the other markers. Although we did not set up an experimental design, we were able to analyze amplification and sequencing success of different methods on 16S and compare success rates for COI and 16S. The primer pair 16S SF/SR was generally reliable and led to better results than universal primers in all studied Janiroidea, except Munnopsidae and Dendrotionidae. The widely applied universal primers for the barcoding region of COI are problematic to use in deep−sea isopods with a success rate of 45–79% varying with family. To improve this, we recommend the development of taxon−specific primers.
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Abstract

The global zoogeographic distribution of the most widespread peracarid species occurring in three or more ocean basins below 2000 m is analysed. Basing on the published data we investigated 45 peracarid species, which have a most widespread distribution and most likely are cosmopolitan. Thirty−three species have a wide distribution in the Northern Hemisphere. Most species occur in the North Atlantic, however, 16 of these species occur also in the North Pacific, a more limited number of species occurs in the South Atlantic or South Pacific The Southern Ocean displays some special zoogeographic features and 22 widespread species occur there below 2000 m, including highly eurybathic ones. In total, 11 of the analysed species occur in all oceans. Eucopia australis (Lophogastrida), Munneurycope murrayi (Isopoda) and Eurythenes gryllus (Amphipoda) are the species with the widest distributions. Other peracarids occurring in all oceans are: the isopods Paramunnopsis oceanica and Eurycope sarsi , the mysid Caesaromysis hispida the lophogastrid Eucopia unguiculata, the amphipod Mesopleustes abyssorum and the tanaids Exspina typica, Paranarthura insignis and Pseudotanais nordenskioldi . No cumacean species has been reported with an ocean−wide distribution but Campylaspis glabra occurs in the Atlantic, Indian and Pacific oceans. Among plenty of rare species in each order there are only few species with wide distribution records. There is evidence from molecular genetic studies that some of the widespread peracarids represent several cryptic species, however, some, e.g. Eucopia australis , seem to be truly cosmopolitan species. Geography of sampling is biasing our view of biogeography. The history and quality of taxonomic work as well as the reliability of geographic records (quality control of large databases) limits our investigations of widespread or cosmopolitan species as much as the limited knowledge of variation within most species causes difficulties in defining morpho−species with certainty.
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